PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00281.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 275aa    MW: 31540.6 Da    PI: 8.3446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00281.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd +l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Rsa1.0_00281.1_g00016.1 14 KGAWTKEEDHKLISYIKSHGEGCWRSLPASAGLLRCGKSCRLRWINYL 61
                             79******************************99************97 PP

2Myb_DNA-binding56.85e-1867111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Rsa1.0_00281.1_g00016.1  67 RGNFTLEEDDLIIKLHSLLGNK-WSLIATRLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.064961IPR017930Myb domain
SMARTSM007177.6E-121363IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-2913108IPR009057Homeodomain-like
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001671.62E-81661No hitNo description
PROSITE profilePS5129428.26662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2865117IPR009057Homeodomain-like
SMARTSM007172.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1667111IPR001005SANT/Myb domain
CDDcd001674.15E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRSPCCEKD HTNKGAWTKE EDHKLISYIK SHGEGCWRSL PASAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TLEEDDLIIK LHSLLGNKWS LIATRLPGRT DNEIKNYWNT HVKRKLIRGG  120
IDPATHRPIK ARRDSPEFRE TEDSLVKVLS FGPQLEKEEG FGEERRYQKG LTCKNESLDL  180
NLELRISPPW QNQQHRDETK LQFGKEKYRC GACRFGLRNA KECSCGNVEC QIEDSSSSSY  240
SSSDISSSIV GYDFLGLNTS VLEFSSLEMN LNEKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382810.0KF738281.1 Brassica napus MYB transcription factor 32-1 (MYB32-1.1) mRNA, complete cds.
GenBankKF7382820.0KF738282.1 Brassica napus MYB transcription factor 32-2 (MYB32-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724996.11e-161PREDICTED: transcription factor MYB32-like
RefseqXP_013724995.11e-161PREDICTED: transcription factor MYB32-like
RefseqXP_009138333.11e-161PREDICTED: transcription factor MYB32-like
SwissprotO496081e-139MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A078HS441e-161A0A078HS44_BRANA; BnaA03g53110D protein
TrEMBLM4DMF21e-161M4DMF2_BRARP; Uncharacterized protein
STRINGBra017685.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.11e-139myb domain protein 32